(Hypertension. 2001;38:332.)
© 2001 American Heart Association, Inc.
Scientific Contributions |
Departments of Internal Medicine and Physiology and Biophysics, University of Iowa, College of Medicine (Q.S., C.D.S.), Iowa City; and Department of Molecular and Cellular Biology, Roswell Park Cancer Institute (K.W.G.), Buffalo, NY.
Correspondence to Curt D. Sigmund, PhD, Chair, Molecular Biology Interdisciplinary Program, Director, Transgenic and Gene Targeting Facility, Department of Internal Medicine and Physiology & Biophysics, 2191 Medical Laboratory, University of Iowa, College of Medicine, Iowa City, IA 52242. E-mail curt-sigmund{at}uiowa.edu
| Abstract |
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Key Words: transcription renin-angiotensin system activator repressor
| Introduction |
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Recently, we reported that a 40-bp promoter proximal region of mE (called m40) was required for maximal enhancer activity.3 Structural and functional dissection of m40 revealed that this region harbored 2 cis-acting elements: Ea, a negative regulatory element, and Eb, a positive regulatory element. Both of them specifically interacted with different nuclear proteins derived from As4.1 cells. NF-Y was identified as the Ea-binding factor by electrophoretic mobility supershift assay. NF-Y is a ubiquitous heterotrimeric transcription factor composed of 3 subunits, NF-YA, NF-YB, and NF-YC.5,6 NF-YB and NF-YC first form a heterodimer, and then NF-YA interacts with the dimerized NF-YB/NF-YC to form the functional heterotrimer. The DNA binding and transactivation activity is unique to the heterotrimer.7 The NF-Y binding site is often called a CCAAT box but can function in the inverted orientation.8 The overall consensus sequence is CTGCTCGCATTGGCTTCG (CTCTGAGTGGCTG in Ren-1c), but less conserved core recognition motifs have been identified in other genes.3,8,9
Although NF-Y is a ubiquitous transcriptional activator, it can also function as a transcriptional repressor.913 The negative regulatory activity of NF-Y is generally due to overlap in the binding site between NF-Y and another stimulatory transcription factor. In the insulin gene, the binding sites for NF-Y and CREB overlap, and NF-Y antagonizes the transcriptional induction caused by cAMP.13 In the renin enhancer, Ea, the NF-Y binding site, overlaps with Eb, the binding site for retinoic acid receptor and other unknown transcriptional activator(s).14 We therefore tested the hypothesis that the negative regulatory activity of NF-Y is exerted by sterically blocking the binding of stimulatory factors to Eb.
| Methods |
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Cell Culture and Transient Transfection
Cell culture and transient transfection of As4.1 cells (ATCC CRL2193) were previously described.3 In brief, As4.1 cells were cultured in reduced-serum OptiMEM supplemented with 2% fetal bovine serum, 1 mg/mL Albumax-II (GIBCO-BRL), penicillin (100 U/mL), and streptomycin (100 mg/mL) for 2 days. The cells (2.5x107) were transfected with equal-molar amounts of plasmid DNA by electroporation balancing with pUC19. RSV-LUC was used as a positive control, and 0.1 µg of CMV-ßGal was cotransfected as an internal control. Cells were harvested and assayed for luciferase and ß-galactosidase activity 48 hours later.3,15 Luciferase activity was normalized to ß-galactosidase activity and then calculated as a percentage of RSV promoter activity. All activity assays were performed in duplicate, the average of 2 readings being 1 data point.
Electrophoretic Mobility Shift and Supershift Assay
Preparations of the nuclear extract from As4.1 cells and probes for electrophoretic mobility shift assay (EMSA) were previously described.3 The parent probe sequence is gatcTGTACTCTGACCTCTGAGTGGCTGGTTGTG (top strand shown), where the 5'-GATC overhangs at each end of the annealed double-stranded oligonucleotides were filled with [
-32P]dATP (NEN) and 3 other cold nucleotides using Klenow DNA polymerase. The mutant probes were generated by inserting CT (b2a), AGGCT (b5a), or AGGCGATGCT (b10a) between the italicized TC. Each binding reaction contained 0.02 pmol labeled probe (
60 000 dpm), 6 µg nuclear extract, 1 µg poly[d(I-C)] (Boehringer Mannheim), and binding buffer with the final concentration of (in mmol/L) Tris-HCl (pH 7.5) 10, EDTA 1, DTT 1, MgCl2 1, and KCl 60, as well as 5% glycerol in a total volume of 20 µL. Cold competitor oligos were preincubated with nuclear extract and binding buffer for 15 minutes on ice before the addition of probes. Binding reactions were incubated with probe on ice for 15 minutes, followed by electrophoresis on 5% nondenaturing polyacrylamide gels. For supershift, the indicated amount of NF-YA or NF-YB antiserum (gift of Dr R. Mantovani, Milan, Italy) was added after the initial incubation of probe, nuclear extract, and binding buffer, and the mixture was left on ice for 30 minutes before electrophoresis.3
Statistical Analysis
All data are presented as mean±SEM. Multiple comparisons were analyzed by 1-way ANOVA with SigmaStat (SPSS Scientific). Single comparisons were performed by use of a t test.
| Results |
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To test this hypothesis directly, we inserted 2, 5, or 10 nucleotides between Eb and Ea in mE by site-directed mutagenesis using the mE2.6 kLUC plasmid as the backbone (Figure 1). All 3 insertions contained the 3' CT-dinucleotide to ensure that the binding sites for both Eb and Ea remained intact. We then performed transient transfection using renin expressing As4.1 cells. As previously reported, addition of mE to the enhancerless 2.6 k Ren promoter markedly induced transcriptional activity (Figure 2A). 3 Consistent with our hypothesis, all 3 insertions increased promoter activity by
2-fold. The increase in transcription caused by the increased spacing between Ea and Eb was identical to that caused by mutation of Ea (mEµa), which prevents the binding of NF-Y to Ea and therefore would allow the binding of transcriptional activators to Eb.
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Because NF-Y is typically considered a transcriptional activator, it became important to determine whether the increase in transcriptional activity caused by increasing the spacing between Ea and Eb was due to a shift in the mechanism of NF-Y action from a repressor to an activator. To address this issue, we generated the same 3 insertion mutations (2, 5, or 10 nucleotides) in plasmids lacking a functional NF-Y binding site and compared transcriptional activity with plasmids with an intact Ea (Figure 2B). Mutation of Ea did not cause any significant loss of transcriptional activity in any construct tested and in fact caused a significant increase in the b2a mutant. The increase in transcriptional activity caused by mutation of Ea in the b2a construct suggests that the 2-bp insertion may have only incompletely removed the overlap between the 2 sites. This finding is confirmed below by EMSA. However, the fact that mutation of the NF-Y binding site did not result in a loss of transcriptional activity suggests that the increased transcriptional activity observed in the b2a, b5a, and b10a mutants is not due to transcriptional activation by NF-Y.
We previously reported that a double-stranded oligonucleotide mX30 (Figure 3A) that contained Ea and Eb formed 2 major DNA-protein complexes (a and b) with nuclear extracts from As4.1 cells.3 To verify that both NF-Y and Eb-binding protein can still form a complex on the insertion mutants, we individually labeled double-stranded oligonucleotides containing the b2a, b5a, or b10a insertions and tested their binding activity using EMSA. Strong complex-a formation was evident on all 3 insertions (Figure 3B). Although strong complex-b formation was observed on the wild-type (WT) and b2a insertions, we noted a reproducible drop in the intensity of complex-b using b5a and b10a as a probe. Nevertheless, that b2a, b5a, and b10a still effectively bound to complex-a and complex-b is demonstrated by their effectiveness as competitors even when competing against the WT oligonucleotide. Moreover, competition analysis using varying levels of competitor DNAs revealed that there was no observable change in the affinity of NF-Y for Ea in the b2a, b5a, and b10a mutants, because each was equally effective in competing for binding to the WT probe (Figure 4). Significantly, the observation that antiserum against either the A or B subunit of NF-Y supershifted complex-a in all 3 mutants confirmed the interaction between NF-Y and Ea in b2a, b5a, and b10a (Figure 5).
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The increase in transcriptional activity and the EMSA data above suggest that increasing the spacing between Ea and Eb may allow both factors to simultaneously bind to the enhancer. Simultaneous binding could also potentially explain the loss of complex-b on b5a and b10a in Figure 3. To test this hypothesis, we examined whether the insertion mutations could permit simultaneous binding of both complexes (a and b) to 1 probe molecule. In normal EMSA, a limited amount of nuclear proteins and an excess of oligonucleotide probe are used. Under these conditions, it is unlikely that 1 probe molecule will bind 2 proteins unless a strong cooperative interaction exists. To increase the probability of 2 complexes assembling on 1 probe, we raised the amount of nuclear extract from 6 to 15 µg per reaction and reduced the amount of labeled probes from 0.02 to 0.002 pmol per reaction. We anticipated that probes carrying 2 protein complexes would migrate more slowly than probes carrying a single complex and will be visualized as a further retarded band on a nondenaturing gel. Interestingly, a "superretarded" band was evident on b5a and b10a (Figure 6A). That this superretarded complex results from the binding of both NF-Y and Eb-binding protein is suggested by competition analysis. As expected, WT mX30, containing both Ea and Eb, efficiently competes for complex-a, complex-b, and complex-ab. Mutant mX30 µa, which lacks Ea, efficiently competes for complex-b on WT and b2a and competes for complex-ab on b5a and b10a, suggesting that complex-ab does indeed contain the Eb-binding protein. Similarly, mutant mX30 µb, which lacks Eb, competes for complex-a on all 4 oligonucleotides and competes for complex-ab on b5a and b10a, suggesting the presence of NF-Y in complex-ab. This is further supported by the observation that competition with mX30 µb restores the formation of complex-b on b5a and b10a, presumably because excess binding of NF-Y on the mX30 µb competitor prevents the formation of the ab double complex and frees the Eb-binding protein to complex alone with Eb. Antiserum to subunit A of NF-Y causes a supershift of complex-a and prevents the formation of complex-ab without causing any obvious additional supershift product (Figure 6B). Interestingly, under some experimental conditions, NF-Y antiserum prevents complex formation, whereas under other conditions, the antiserum causes a clear and abundant supershift to appear.16,17
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Taken together, these data strongly suggest that NF-Y mediates its antagonistic activity by preventing the binding of Eb-binding protein(s) to Eb. Increasing the spacing did not cause NF-Y to act as a positive factor and did not affect the ability of NF-Y to bind to the modified enhancers. In fact, increasing the spacing by 5 and 10 nucleotides provided an opportunity for both NF-Y and Eb-binding protein to simultaneously bind to mX30.
| Discussion |
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NF-Y is generally considered a ubiquitous transcriptional activator, although the exact mechanisms through which NF-Y regulates transcription is not totally clear. Sequence surveys have revealed that most stimulatory NF-Y binding sites are located from -80 through -100 in TATA-containing promoters or very close to the transcription start site in TATA-less promoters.8,18 Other studies of NF-Y containing promoters have demonstrated that the positive function of the NF-Y site also depends on other adjacent cis-acting elements.19,20 In mouse Ren, Ea is located far upstream of the promoter (about -2.6 kb) and does not have the previously reported adjacent cis-acting elements that cooperated with positive NF-Y sites in the other genes.
The negative regulatory activity of NF-Y has been reported in several genes.913 Mutation of an NF-Y binding site overlapping with a C/EBP site upstream of the human apolipoprotein A-I promoter increases transcription.9 Overlap of NF-Y and a CRE in the promoter proximal region of the rat insulin I gene attenuates transcriptional stimulation by cAMP.9,13 Although Ea does not match a perfect consensus NF-Y site (It has a single-base substitution in its core recognition motif), the same single-base substitution also exists in human apolipoprotein A-I gene, which is also repressed by NF-Y.9
Under normal conditions, activation of the enhancer may involve a competition between NF-Y and the factors binding to Eb. It is likely that both the amount of NF-Y and Eb-binding protein and their relative binding affinity may be determinants of this competition. EMSA experiments reproducibly suggest that the level of NF-Y exceeds the level of Eb-binding protein under baseline conditions. It is possible that specific conditions exist that change the balance between these proteins and therefore favor binding to Eb. It is known that the level or affinity of NF-Y can be regulated by the redox state of the cell, intracellular calcium concentration, cellular differentiation, and the presence of serum supplementation.16,2123 Exactly what physiological cues regulate the level or affinity of the Eb-binding protein will have to wait for the unequivocal identification of that factor(s) (see below).
It is now becoming clear that the mechanism by which the renin enhancer regulates renin transcription will be quite complicated because, in addition to the elements described above, additional elements upstream of Eb have recently been shown to be required for maximal enhancer activity (Figure 7). One element, termed Ec, which located 10 bp upstream of Eb, is a direct repeat of the Eb TGACCT motif. TGACCT direct repeats have been reported to bind members of the nuclear hormone receptor superfamily of transcription factors.24 We have recently demonstrated that Eb is a half-site for retinoic acid receptor (RAR). Eb and Ec together can bind RAR
and RXR
and form a functional RAR element.14 In the studies described herein, Ec was intact and the distance between Ec and Eb remained unaltered. In addition, an element called Ed, which lies further upstream of Ec and Eb, has homology to a CRE and may thus bind members of the CREB/ATF-1 family of transcription factors (T.A. Black, et al, unpublished observation, 2000). It is likely that the interplay between transcription factors binding to these sites may be required because the CREB/ATF-1 and RAR/RXR pathways share a similar coactivator in p300/CBP.25,26 Other yet-unidentified regulatory elements may also be present in the Ren enhancer, and other transcription factors may bind to Ed, Ec, Eb, and Ea. In the end, it is likely that ubiquitous positive and negative regulatory factors will be found to cooperate to regulate expression of renin through the enhancer.
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| Acknowledgments |
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Received January 29, 2001; first decision February 21, 2001; accepted February 23, 2001.
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